Detect regions of high mobility in a protein simulation. – AMBER-hub
IJMS | Free Full-Text | In Silico Insights into Protein–Protein Interaction Disruptive Mutations in the PCSK9-LDLR Complex | HTML
Residue Geometry Networks: A Rigidity-Based Approach to the Amino Acid Network and Evolutionary Rate Analysis | Scientific Reports
AlphaFold2 models indicate that protein sequence determines both structure and dynamics | Scientific Reports
Example for how to calculate the root mean square fluctuation (RMSF)... | Download Scientific Diagram
Detect regions of high mobility in a protein simulation. – AMBER-hub
Figure S3. Per-residue fluctuation of the b-factor during simulation... | Download Scientific Diagram
IJMS | Free Full-Text | Conserved Conformational Hierarchy across Functionally Divergent Glycosyltransferases of the GT-B Structural Superfamily as Determined from Microsecond Molecular Dynamics | HTML
Binding of regulatory proteins to nucleosomes is modulated by dynamic histone tails | Nature Communications
Distance-Based Configurational Entropy of Proteins from Molecular Dynamics Simulations | PLOS ONE
Enhanced Conformational Sampling with an Adaptive Coarse-Grained Elastic Network Model Using Short-Time All-Atom Molecular Dynamics | Journal of Chemical Theory and Computation
Comparison of residue fluctuation (root mean square fluctuation (RMSF))... | Download Scientific Diagram
Root Mean Square Fluctuation. Per-residue root mean square fluctuation... | Download Scientific Diagram
Residual Sum of Squares - Meaning, Formula, Examples, Calculate
Docking studies and molecular dynamics simulations of the binding characteristics of waldiomycin and its methyl ester analog to Staphylococcus aureus histidine kinase | PLOS ONE
Computational drug repurposing strategy predicted peptide-based drugs that can potentially inhibit the interaction of SARS-CoV-2 spike protein with its target (humanACE2) | PLOS ONE
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A Computational Analysis of the Factors Governing the Dynamics of α7 nAChR and Its Homologs
![Dynamic residue interaction network analysis of the oseltamivir binding site of N1 neuraminidase and its H274Y mutation site conferring drug resistance in influenza A virus [PeerJ]](https://peerj.com/articles/11552/graphical-abstract.jpg "Dynamic residue interaction network analysis of the oseltamivir binding site of N1 neuraminidase and its H274Y mutation site conferring drug resistance in influenza A virus [PeerJ]")
Dynamic residue interaction network analysis of the oseltamivir binding site of N1 neuraminidase and its H274Y mutation site conferring drug resistance in influenza A virus [PeerJ]
Secondary Structure and Conformational Stability of the Antigen Residues Making Contact with Antibodies | The Journal of Physical Chemistry B
IJMS | Free Full-Text | Molecular Dynamics-Derived Pharmacophore Model Explaining the Nonselective Aspect of KV10.1 Pore Blockers | HTML
IJMS | Free Full-Text | Structure and Thermal Stability of wtRop and RM6 Proteins through All-Atom Molecular Dynamics Simulations and Experiments | HTML
Root Mean Square Fluctuation. Per-residue root mean square fluctuation... | Download Scientific Diagram
Calculating the root mean square fluctuation over a trajectory — MDAnalysis User Guide documentation
Beginning Trajectory Analysis
The role of disulfide bonds in a Solanum tuberosum saposin-like protein investigated using molecular dynamics | PLOS ONE
Fluctuations and Correlations in Crystalline Protein Dynamics: A Simulation Analysis of Staphylococcal Nuclease - ScienceDirect
